Media Summary: nf-core/sarek: A workflow for germline, tumor-only, and somatic analysis of NGS data. In this video, we explore a catalog of best-practice bioinformatic Visit our website: Follow us on Twitter: .

Tutorial Running Pipelines Friederike Hanssen - Detailed Analysis & Overview

nf-core/sarek: A workflow for germline, tumor-only, and somatic analysis of NGS data. In this video, we explore a catalog of best-practice bioinformatic Visit our website: Follow us on Twitter: . nf-core/sarek: a comprehensive & efficient somatic & germline variant calling workflow. Dr. Phill Ewels, Team Leader for Bioinformatics development at the National Genomics Infrastructure (NGI) en el SciLifeLab en ... Goal: to go directly from data to a sample sheet and design.csv file as input into NF_CORE RNAseq

Talk recorded during the ARTICnetwork and CLIMB-BIG-DATA workshop on COVID-19 data analysis (14-15 January 2021)

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Tutorial: running pipelines - Friederike Hanssen
Nextflow Summit 2022 - Friederike Hanssen
Nextflow Tutorial #4: Exploring nf-core pipelines
Friederike Hanssen - Bioinformatics analyses with portable and reproducible pipelines on public data
nf-core/sarek: a pipeline for efficient germline... - Friederike Hanssen - Poster - ISMB/ECCB 2023
RNAseq: Run Pipeline
Nextflow Summit 2023 - Friederike Hanssen
DolphinNext Tutorial 03 -  Running RNA-Seq Pipeline
Featured nf-core pipelines: RNAseq - Alex Peltzer
[Nextflow DSL2] Running a remote pipeline using Docker
Open and reproducible bioinformatics with Nextflow and nf-core
Institutional Usage Tutorial & First Pipeline Release: London 2020 nf-core hackathon
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Tutorial: running pipelines - Friederike Hanssen

Tutorial: running pipelines - Friederike Hanssen

Find out more at https://nf-co.re/events/2020/hackathon-july-2020

Nextflow Summit 2022 - Friederike Hanssen

Nextflow Summit 2022 - Friederike Hanssen

nf-core/sarek: A workflow for germline, tumor-only, and somatic analysis of NGS data.

Nextflow Tutorial #4: Exploring nf-core pipelines

Nextflow Tutorial #4: Exploring nf-core pipelines

In this video, we explore a catalog of best-practice bioinformatic

Friederike Hanssen - Bioinformatics analyses with portable and reproducible pipelines on public data

Friederike Hanssen - Bioinformatics analyses with portable and reproducible pipelines on public data

Visit our website: https://www.qbic.uni-tuebingen.de Follow us on Twitter: @QBIC_tue.

nf-core/sarek: a pipeline for efficient germline... - Friederike Hanssen - Poster - ISMB/ECCB 2023

nf-core/sarek: a pipeline for efficient germline... - Friederike Hanssen - Poster - ISMB/ECCB 2023

nf-core/sarek: a

RNAseq: Run Pipeline

RNAseq: Run Pipeline

Goal:

Nextflow Summit 2023 - Friederike Hanssen

Nextflow Summit 2023 - Friederike Hanssen

nf-core/sarek: a comprehensive & efficient somatic & germline variant calling workflow.

DolphinNext Tutorial 03 -  Running RNA-Seq Pipeline

DolphinNext Tutorial 03 - Running RNA-Seq Pipeline

Content of

Featured nf-core pipelines: RNAseq - Alex Peltzer

Featured nf-core pipelines: RNAseq - Alex Peltzer

Find out more at https://nf-co.re/events/2020/hackathon-july-2020.

[Nextflow DSL2] Running a remote pipeline using Docker

[Nextflow DSL2] Running a remote pipeline using Docker

A demo of how we can share

Open and reproducible bioinformatics with Nextflow and nf-core

Open and reproducible bioinformatics with Nextflow and nf-core

Dr. Phill Ewels, Team Leader for Bioinformatics development at the National Genomics Infrastructure (NGI) en el SciLifeLab en ...

Institutional Usage Tutorial & First Pipeline Release: London 2020 nf-core hackathon

Institutional Usage Tutorial & First Pipeline Release: London 2020 nf-core hackathon

2 Events: Institutional Usage

Setup RNA-Seq Pipeline from scratch: fastq (reads) to counts | Step-by-Step Tutorial

Setup RNA-Seq Pipeline from scratch: fastq (reads) to counts | Step-by-Step Tutorial

This is a detailed workflow

RNAseq: Design File & Sample Sheet

RNAseq: Design File & Sample Sheet

Goal: to go directly from data to a sample sheet and design.csv file as input into NF_CORE RNAseq

Introduction to Nextflow DLS2 with de novo assembly tutorial [keynote]

Introduction to Nextflow DLS2 with de novo assembly tutorial [keynote]

The code is https://github.com/telatin/nextflow-example The written

RNAseq Pipeline Input 1: Sample sheet !

RNAseq Pipeline Input 1: Sample sheet !

We are taking our first step to

nf-core pipelines - Harshil Patel (Day 3_1)

nf-core pipelines - Harshil Patel (Day 3_1)

Day 3 - session 1 Talk: nf-core

Complete Jenkins Pipeline Tutorial | Jenkinsfile explained

Complete Jenkins Pipeline Tutorial | Jenkinsfile explained

In this complete Jenkins

04 - ARTIC Nanopore+Illumina Nextflow Pipeline - Matt Bull

04 - ARTIC Nanopore+Illumina Nextflow Pipeline - Matt Bull

Talk recorded during the ARTICnetwork and CLIMB-BIG-DATA workshop on COVID-19 data analysis (14-15 January 2021)