Media Summary: Introduction to primitive quantitative measures of node importance in gene networks: degree centrality (how many nodes that a ... Basic usage and concerns of scanning the genome for identifying TF binding, as well as a brief discussion of other applications of ... A discussion of the types of recurrent structure in gene networks (motifs), as well as global properties of gene networks (e.g. ...
2022 Mcb 182 Lecture 6 Transcriptomics - Detailed Analysis & Overview
Introduction to primitive quantitative measures of node importance in gene networks: degree centrality (how many nodes that a ... Basic usage and concerns of scanning the genome for identifying TF binding, as well as a brief discussion of other applications of ... A discussion of the types of recurrent structure in gene networks (motifs), as well as global properties of gene networks (e.g. ... Basic experimental design considerations of scRNA-seq, including dropout noise, batch effects A discussion of the role of modules (groups of highly connected genes, with few connections to other genes) in gene networks, ... Basic QC metrics for ChIP-seq (genomic input, mapped reads, library complexity, strand cross-correlation)
We introduce the concept of scoring schemes and what types of sequence differences are more evolutionarily frequent than ... A brief introduction into the concept of epistasis in GWAS studies, as well as the missing heritability problem. A brief introduction to a few non-coding RNA types, including miRNA, lncRNA and eRNA. Introduction to single cell RNA sequencing Motivation for the development of RNA-seq
